I have to say the new URC stuff has been bulletproof for us. The MSC with the RFX-250 has been great with the newer MX-3000s and MX-950s. I have used a bunch of MX-900s with MRF-350s and those too have been perfect. Any case where I used a MRF-300 and had any issues big or small, plugging in the RFX-250 to the MRF-300 has solved them all.
My opinion would be that if you switch to the new URC equipment you will get what you are looking for. The MSC-400 is a great piece with storing the macros and only using a trigger command. For single commands it still works like an MRF by routing the remote command to the right emitter, but for macros it can't be beat.
There are 10 types of people in this world, There are those who understand binary, and those who don't!